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Re: Ask Quick Questions, Get Quick Answers [Re: Mr Piggy]
    #28912377 -

Need agar advice!

I transferred agar wedges from a master plate to 3 new plates about a week ago. The mycelium appears to be growing and spreading from the middle where I dropped the agar wedges, but there is also thinner & whispier growth coming from the sides and moving towards the main transfer point in the middle. Most notably on the bottom right of dish 2, but also at the top of dish 1 and the right side of dish 3.

How does the growth look so far? Are they all contaminted? If so, are any of my agar plates salvagable?






Edited by stuffedmushrooms (08/15/24 05:26 PM)

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Re: Ask Quick Questions, Get Quick Answers [Re: fiddle_head] * 2
    #28912382 -

fiddle_head said:
Fezzgig said:
Just a quick question.  I have a one quart jar with WBS spawn that is ready for bulk.  I had a bunch more, but had trich and tossed it.

I have a small 20 quart monotub that I intended to use the whole jar on. However, I ended up prepping a 64 quart tub as well. 

So, I have one quart of clean spawn.  Should I use the entire quart on the small tub or is it possible to make it stretch for both tubs?  I don’t mind having patience if it just takes longer to fruit.

Alternatively, I had the idea of using 3/4 of the spawn on the small tub and using the remainder to spawn several more WBS jars.



just spawn it into the 20qt



just sent 2qt 1:3 to a 5L shoebox compressed to the rim :curbyourenthusiasm:


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“All this buttoning and unbuttoning”

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Re: Ask Quick Questions, Get Quick Answers [Re: ambigu]
    #28912408 -

ambigu said:
Often I read that people try to improve a cultivar by selecting a fruit with the best phenotype within a tub, make a spore print, get a clean culture, grow new fruits, and repeat those steps over and over.

QQ: is my assumption correct that this doesn’t work when you isolate a strain on agar every time? My reasoning is that situation every fruit has the same genotype, regardless of what it looks like.

And if so, does this also mean it’s beneficial to send a plate to grain ASAP when it appears clean, so that there is as much genetic diversity as possible?



ESL?

I’m trying to understand your question but it looks like a few concepts have become semantically entangled here.

Isolation, stabilization, and cloning are all different things and are approached very differently


--------------------
A Love Letter to New Growers
The 7 Edicts of Mushroom Cultivation as Decreed by Smellyhobbit

:kodama:


Anyone can get a canopy. But can you get what you want?

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Re: Ask Quick Questions, Get Quick Answers [Re: Smellyhobbit] * 1
    #28912470 -

I think they're saying if you've isolated a single strain via multiple transfers (which is harder than it sounds to get a fruitful monoculture). .. that all resulting fruits from such are geneticly similar; and what's the next step if so?

Isolation-cloning, isolation-cloning.....stabilization

Edited by LewDoja (08/15/24 03:09 PM)

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Re: Ask Quick Questions, Get Quick Answers [Re: LewDoja]
    #28912475 -

What have peoples experiences been with yield relative to quantities of spawn and coir used? If I add twice as much and have a 3 inch substrate as opposed to half that, am I likely to get about twice the yield across all flushes?

Obviously it's different every time and it's not going to be neat math like this. This is essentially to determine whether to make one really beefy tub or two smaller ones.

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Re: Ask Quick Questions, Get Quick Answers [Re: LewDoja]
    #28912478 -

I’ll let OP chime in again. Talking about isolation and spores and clones but seemingly asking one question that doesn’t have to do with any of it 😂


--------------------
A Love Letter to New Growers
The 7 Edicts of Mushroom Cultivation as Decreed by Smellyhobbit

:kodama:


Anyone can get a canopy. But can you get what you want?

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Re: Ask Quick Questions, Get Quick Answers [Re: Smellyhobbit] * 1
    #28912481 -

ESL = English as a Second Language? The fact that I had to look that up probably already says enough, but yes, definitely true :grin: the fact that I just started this year with mushroom cultivation could be a reason as well for mixing up words/not being clear.

I do mean isolation, though. I realise stabilisation as a result of inbreeding also makes it harder to improve traits by selecting, but for this question let’s assume we’re starting from a wild strain.

My assumption is that when you have isolated a strain on agar (= a monoculture or a single strain?), and you let that single strain colonise a tub, the fruits may look different because of non-genetic reasons, but the different traits of the fruit that actually sporulates is not expressed in its spores, so it wouldn’t matter which fruit you would pick to make a spore print.

Does that make it more clear?

Edited by ambigu (08/15/24 03:19 PM)

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Re: Ask Quick Questions, Get Quick Answers [Re: fiddle_head] * 2
    #28912487 -

fiddle_head said:
the bare grains and condensation combined with the uneven, sparse growth and milky texture all point unequivocally to bacteria. it can affect both the morphology and behavior of the living mycelium.



I have no idea but this the first time I've seen anyone describe this harder to recognize bacteria in a way that made explainable sense to me. I think I'll be able to catch it now thanks to this description, thanks. 😻


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Endlessly endorsing empathy empirically energizing existence

~Always practice radical kindness~
R.I.P. Betty Boop, greatest mother to ever do it.

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Re: Ask Quick Questions, Get Quick Answers [Re: ambigu] * 7
    #28912503 -

ambigu said:
ESL = English as a Second Language? The fact that I had to look that up probably already says enough, but yes, definitely true :grin: the fact that I just started this year with mushroom cultivation could be a reason as well for mixing up words/not being clear.

I do mean isolation, though. I realise stabilisation as a result of inbreeding also makes it harder to improve traits by selecting, but for this question let’s assume we’re starting from a wild strain.

My assumption is that when you have isolated a strain on agar (= a monoculture or a single strain?), and you let that single strain colonise a tub, the fruits may look different because of non-genetic reasons, but the different traits of the fruit that actually sporulates is not expressed in its spores, so it wouldn’t matter which fruit you would pick to make a spore print.

Does that make it more clear?



One does not simply isolate a “strain” on agar. A strain is a dikaryon, or single hypahe (mycelium strand). With a terminal tip formed from the plasmogamy of two haplonts (monokaryons)
These are different from varieties, or cultivars as you stated.

The only way to isolate a single strain on agar is with a microscope or serial dilution or other advanced techniques which you may or may not be familiar with. The genotype is mixed within the basidiocarp (fruit) population in the tub because of two reasons.

1. Many strains exist within that tiny transfer. Even if you made many transfers you will still not ever end up with a single strain. Many many thousands of spores will fit on the tip of a needle. Imagine planting a bunch of seeds together and having to separate the root ball except x1000000. We do the best we can and select for the best growth as the culture develops on agar.

2. Di-Mon mating. A monokaryon ("seed") can accept a nucleus from a different dikaryon. This can result in a different pairing and different genotypes.

Dikaryons (strands) have two nuclei per cell because the “seeds” (monokaryons) have paired and conjoined so they can mate later in the mushroom gills. This is called karyogamy. It is when the two nuclei from earlier fuse to form a single diploid nucleus, which then splits into four haploid nuclei, each with its own genotype. This is what is in the spores.

In this way you can have many genotypes of the same variety in the same tub. We select based on appearance because we have little else to go on.

Inbreeding results in lower heterozygosity which means your chances past a certain point for a novel genotype is moot.

I am not the best at explaining things sometimes but I hope this has helped. I probably raised more questions than I answered.

I am sorry for the typos, sent from my phone.

edit: corrected typos and accounted for any gaps in understanding/nomenclature.


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Edited by fiddle_head (08/15/24 03:57 PM)

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Re: Ask Quick Questions, Get Quick Answers [Re: Nichrome] * 6
    #28912524 -

ambigu said:
ESL = English as a Second Language? The fact that I had to look that up probably already says enough, but yes, definitely true :grin: the fact that I just started this year with mushroom cultivation could be a reason as well for mixing up words/not being clear.

I do mean isolation, though. I realise stabilisation as a result of inbreeding also makes it harder to improve traits by selecting, but for this question let’s assume we’re starting from a wild strain.

My assumption is that when you have isolated a strain on agar (= a monoculture or a single strain?), and you let that single strain colonise a tub, the fruits may look different because of non-genetic reasons, but the different traits of the fruit that actually sporulates is not expressed in its spores, so it wouldn’t matter which fruit you would pick to make a spore print.

Does that make it more clear?



A lot of it is carefully executed stabbing in the dark .

A monoculture is not a single strain. The definition of monoculture is single individual. If your agar and spawn is axenic (clean, no bacteria or mold, etc) then it is a monoculture. But we are not concerned with that here.

I think what you are asking is, why try to pick and choose when they are all the same anyway, but there are some flaws here in your understanding, Mainly that they all possess the same genotype, which is not to be confused with “variety”

When you select a fruit to harvest spores you are working with the hope that the next generation will produce more of the same fruit. We clone to narrow down the possible strains, and grow it from spore again so that the genetic pool is slowly narrowed over generations.

Without genetic diversity there would be no need to attempt stabilization. This is usually a part of breeding, but people do all sorts of things, often without a fundamental understanding of the reproducing mechanisms of agaricales (fruit body producing fungus sp.)

People try to stabilize by cloning and growing out from spore again because there is not a better or simpler way.

The entire tub is many hundreds of thousands, if not more, of genetically unique “individuals” (strains/ “seeds”)

Edit: it is of note that there exist multiple strains within the same fruit, which is more recently accepted.

also corrected for typos and to account for any gaps in understanding.


--------------------
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tail-lights, back-pockets, rearview mirrors

guides | grows | supreme air box | sporeaddict
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Edited by fiddle_head (08/15/24 03:59 PM)

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Re: Ask Quick Questions, Get Quick Answers [Re: fiddle_head] * 1
    #28912534 -

Any one know some sources for a vertical laminar flow hood frame? I have a 22.6 x 22.6 FFU and i would like to set it up vertical blowing down in a nice frame. Has anyone ran across a place that just sells the frames?

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Re: Ask Quick Questions, Get Quick Answers [Re: Arkyhog]
    #28912612 -

Hello friends, I have a question. Are there diminishing returns on filial generations? Like, do professional mycologists push 100+ generations or does it level out at some point?

Follow up to that, if you've stabilized a "best" culture to the point of mass production, would you keep propagating the mycelium on agar and just use that?

I don't know what the end game looks like; any info would be cool!


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Re: Ask Quick Questions, Get Quick Answers [Re: Mr Piggy]
    #28912651 -

Mr Piggy said:
UtahGetMeTwo said:
salubrious said:
UtahGetMeTwo said:
I used the tall half pint jars for my first grow and they took a good 3+ weeks to fully colonize/start pinning in the jar.



Cheers Utah…will persevere



Cheers sir.

999999999 said:
yeah but this one is no bueno, sorry to say.
Mycelium is creamy and it's already too wet inside, bacteria took a leg up



Mr Piggy said:
Animate cream cheese.



Listen to these cultivators, though. They knows what they talkin about. May want to take another crack at running some new jars.



To be fair, I just sent a cake about as disgusting... if not more.  I've never seen anything move so slow.  If a pin hadn't of finally popped it was about compost pile time.



Thanks for the feedback everyone… looking back I feel my agar spawn wasn’t clean enough.

Definitely improving..someone posted they don’t take transfers from the leading edge and I seem to be having better success since not taking the leading edge. Starting to look more organised.


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Re: Ask Quick Questions, Get Quick Answers [Re: Nichrome] * 10
    #28912672 -

Hey Benson good to see you bud

Stabilization works because with each filial generation you produce you are reducing heterozygosity. When you print you get a random mix of all the genes, and since both parents of your offspring came from the same fruit, it’s just selfing/inbreeding each time you grow out from spore. The dominant allele at the respective gene loci will produce the phenotype in a heterozygous state. (Yy) so that is what we see in gen 1.

The traits we are trying to stabilize could be the product of several genes inherited  as a unit (polygenic) and are often recessive. So when we perform a cross we are looking for candidates in the f1 that look like regular mushrooms. This is because when you cross you are initially expanding the gene pool, adding heterozygosity (same operating principle as back-crossing) These will have the mixed genotype (Yy/yY) but the dominant allele is expressed while our recessive trait is buried. (these are just examples)

This changes in the second filial when genetic recombination can now produce 4 different genotypes at the respective locus or loci instead of just 2. Since you are inbreeding each time you grown from spore you now have the possibility for those recessive traits to appear (Yy x yY = YY, Yy, yY, yy - Once again just a convenient oversimplified example…)

This is why we select early and archive prints from previous gens so we can take a step back on the “chessboard” if our trait appears to have been bred out inadvertently, which is often the case. Pursuing a culture line that is not presenting the traits you want after a few gens is a waste of time and effort. It is a checkmate. Once the traits are bred out they are gone forever. This is why people back cross.

For this reason it is moot to breed out more than 7-8 filial generations. The decrease in heterozygosity is exponentially decreased with each generation. So for this reason it levels out. By the 7th filial the % net loss in heterozygosity is literally the definition of diminishing returns.

TLDR as far as pushing a culture 100+ gens, yes it would be supremely futile. it is costly to hope for a bad culture to improve by moving forwards. The returns on anything past gen 7-8 are negligible.

If I have a winning clone culture I will preserve it on agar and save a “master” wedge in distilled water, or transfer the culture to lc and preserve that way. This way you always have a starting point t to go back to if you need to start over or access the genetic material. Like saving your game. Very similar to saving an early generation print for backcrossing if it should become necessary. You could also just use a slant or plate as your master and store in the fridge.


--------------------
----<><><>----
tail-lights, back-pockets, rearview mirrors

guides | grows | supreme air box | sporeaddict
bring back ῥͳϻ

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Re: Ask Quick Questions, Get Quick Answers [Re: fiddle_head] * 1
    #28912689 -

Super helpful writeup, thanks fid!

:takingnotes:


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Re: Ask Quick Questions, Get Quick Answers [Re: Benson]
    #28912764 -

I was going to start getting into cross breeding and such but...after reading that I'll stick to what I got for now :eek: I'll revisit at a later date XD


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15 year lurker

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Re: Ask Quick Questions, Get Quick Answers [Re: Benson] * 1
    #28912771 -



Are these spores? Been traveling for work for a few days and getting minimal help from the missus while I’m gone.

Just want to make sure these aren’t bad/rotted before I ask her to harvest them.

Sorry for the shit quality. I have a video too but when I take a screenshot of the video in iOS the file size is huge and too big to upload here.


--------------------
Hitchhiker's Guide to the Shroomery


“Once in a while you get shown the light, in the strangest of places if you look at it right.”

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Re: Ask Quick Questions, Get Quick Answers [Re: UtahGetMeTwo] * 3
    #28912775 -

definitely spores. or sunspots. but it is spores.


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Stoned Gummys | BRF Pucks | Primo Reusable Plates | Easy LI 4 Preserv & Propo
"Psychedelics are powerful substances. Nothing that powerful is completely safe... and nothing completely safe is that powerful!" - Abigail Calder at ALPS 2023
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Re: Ask Quick Questions, Get Quick Answers [Re: ReverendMyc]
    #28912779 -

ReverendMyc said:
definitely spores. or sunspots. but it is spores.



Thanks, Rev. I know it’s hard to tell, but do you think these would be okay if I waited to harvest when I get home in about 24 hours?


--------------------
Hitchhiker's Guide to the Shroomery


“Once in a while you get shown the light, in the strangest of places if you look at it right.”

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Re: Ask Quick Questions, Get Quick Answers [Re: fiddle_head] * 2
    #28912784 -

fiddle_head said:
Hey Benson good to see you bud

Stabilization works because with each filial generation you produce you are reducing heterozygosity. When you print you get a random mix of all the genes, and since both parents of your offspring came from the same fruit, it’s just selfing/inbreeding each time you grow out from spore. The dominant allele at the respective gene loci will produce the phenotype in a heterozygous state. (Yy) so that is what we see in gen 1.

The traits we are trying to stabilize could be the product of several genes inherited  as a unit (polygenic) and are often recessive. So when we perform a cross we are looking for candidates in the f1 that look like regular mushrooms. This is because when you cross you are initially expanding the gene pool, adding heterozygosity (same operating principle as back-crossing) These will have the mixed genotype (Yy/yY) but the dominant allele is expressed while our recessive trait is buried. (these are just examples)

This changes in the second filial when genetic recombination can now produce 4 different genotypes at the respective locus or loci instead of just 2. Since you are inbreeding each time you grown from spore you now have the possibility for those recessive traits to appear (Yy x yY = YY, Yy, yY, yy - Once again just a convenient oversimplified example…)

This is why we select early and archive prints from previous gens so we can take a step back on the “chessboard” if our trait appears to have been bred out inadvertently, which is often the case. Pursuing a culture line that is not presenting the traits you want after a few gens is a waste of time and effort. It is a checkmate. Once the traits are bred out they are gone forever. This is why people back cross.

For this reason it is moot to breed out more than 7-8 filial generations. The decrease in heterozygosity is exponentially decreased with each generation. So for this reason it levels out. By the 7th filial the % net loss in heterozygosity is literally the definition of diminishing returns.

TLDR as far as pushing a culture 100+ gens, yes it would be supremely futile. it is costly to hope for a bad culture to improve by moving forwards. The returns on anything past gen 7-8 are negligible.

If I have a winning clone culture I will preserve it on agar and save a “master” wedge in distilled water, or transfer the culture to lc and preserve that way. This way you always have a starting point t to go back to if you need to start over or access the genetic material. Like saving your game. Very similar to saving an early generation print for backcrossing if it should become necessary. You could also just use a slant or plate as your master and store in the fridge.



I was into keeping snakes for a lot of years and kicked around the idea of breeding, so I have the broad strokes of gene selection, but god daaaaamn...your explanations here are amazing, but my head is spinning. I think I'm eventually going to learn more about all of this, but should probably learn to walk before I try to run.


--------------------


Hitchhikers Guide to The Shroomery

Shine on forever, shine on benevolent son
Shine down upon the severed
Shine until the two become one

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