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Re: Spore cleaning without a centrifuge or agar [Re: catnip40] * 2
    #29132323 -

catnip40 said:
RoscoeReturns said:
catnip40 said:
how far do you reckon this goes in the other direction? spores surely last below freezing right?

I've heard people mention that cubes dont exist outside their native range not because of the cold winters/weather its because outside the gulf/native range theres not enough moisture for them to exist. but in reality it prob has to do with both of those equally

i'm not sure i have ever actually tried to find out what temp or how long at "what" temp a cube spore dies though and i dont really think theres any actual information on that either lol



I have no experience with spores, but cubensis mycelium survives freezing for extended periods. I’ve revived cubensis mycelium that was in the freezer for a year. I would think spores would be even more cold hardy. I guess my question is what do you gain by freezing spores? I understand the utility of pasteurized spores when trying to save a contaminated culture, but freezing?




dont know, dont care!! just popped into my head, i told stipe i wasnt trying to derail the thread.

there are some papers about freezing cultures and or spores to deal with mites but i think heat might prove more beneficial for that as well



Thank you for that. I really had no idea.

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Re: Spore cleaning without a centrifuge or agar [Re: RoscoeReturns] * 3
    #29132648 -

Now I wonder if pasteurization can assist in hydration of old stubborn spores as well.

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Re: Spore cleaning without a centrifuge or agar [Re: myceliups]
    #29132689 -

Do we know an upper limit to temperatures that spores will survive? I put 100ml in with my agar yesterday in the instant pot. I'm going to test with a syringe and see if anything grows.

I did the scraping in open air btw, so if the spores survive, it should also in theory not contaminate.


--------------------
I call them Huskies cause they Mush!


Huskies' Grimoire
The Official Wild Cubensis Thread
Easy Instant Pot Agar
Let's Talk Cowtek

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Re: Spore cleaning without a centrifuge or agar [Re: myceliups]
    #29132700 -

I am curious.

But yellow...

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Re: Spore cleaning without a centrifuge or agar [Re: RoscoeReturns]
    #29132701 -

RoscoeReturns said:
I have no experience with spores, but cubensis mycelium survives freezing for extended periods. I’ve revived cubensis mycelium that was in the freezer for a year. I would think spores would be even more cold hardy. I guess my question is what do you gain by freezing spores? I understand the utility of pasteurized spores when trying to save a contaminated culture, but freezing?




Thank you for this. I've been trying to find a way to preserve semperviva spores for longer than a year to no avail, unlike the mycelium that can be kept in stasis for 2+ years (in my own experience) and brought back to life without a problem (well, not really hibernating, are they? lol) :oldman::rofl:

Case in point:



If we can preserve the integrity of such 'short shelf life' stubborn spores for at least 10 years, we'll be golden :nicesmile::heart::heart:

ps,
Apologies @Stipe, not trying to derail the thread or anything, just adding more food for thought :heart::heart:


--------------------
:ancientaliens:

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Re: Spore cleaning without a centrifuge or agar [Re: Stipe-n Cap] * 5
    #29132720 -









Alright! Here is my progress and my method for testing out pasteurizing spore syringes. So far I have used dirty plates that I have set over clean prints and the tapped on top so they dropped spores onto the prints, and then I have one clean print as a control (for what it's worth). I have labelled each syringe according to how much I tapped on top of the plate.

Hopefully this can serve as a proof of concept, I'm open to criticism of my methodology and advice is appreciated. I used boiled tap water for the spore syringe, using a rather old method. If I need to use a better method rather than 10 minutes of boiling water than I can redo the syringes.
https://www.shroomery.org/forums/showflat.php/Number/12098357#12098357

I will be pasteurizing them for an hour at 145f, I'm using a stovetop for to get the water to temp.

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Re: Spore cleaning without a centrifuge or agar [Re: syllable] * 2
    #29132741 -

Woot, less than 48 hours and you got people in the community doing science!

This is what I did today. The blue lidded container here is my oldschool pastyplate receptacle of choice. It was PC'ed for 45 minutes (vented for 10) alongside my agar and tools in the instant pot, in the classic pastyplate method of wrapping.

Before PCing it, I took an old print of husky, and a new swab of Yeti, and I rubbed most of the old print up with the swab of Yeti, which was then rubbed into the water itself, which was just filtered water. All of this is open air in the kitchen of course. The husky print has WAY more volume, but it is older. Since I mostly used the q-tip, perhaps I can even get a cross from this experiment. Should be easy enough to spot a standard cube + yeti cross (do your Yetis has blue looking spores?)



I nocced up 3 plates, 1 of them being my new ramen recipe for testing purposes. I also had these PF Tek cakes that I had inoculated with Bisporus Washington, but these ones showed no sign of growth after weeks while the others do.

So, I shot some cubensis spores into them. These are actually made with liquid plant fertilizer in them, which apparently makes them very easy to contaminate. So, if they end up colonizing properly, well, that would be a great endorsement for this method of spore cleaning. I was intentionally sloppy.

Afterwards I added more spore solution in the syringe, and I will try doing some regular pf tek cakes soon to test it out there. The agar should be enough proof either way.

What do you think will happen?


--------------------
I call them Huskies cause they Mush!


Huskies' Grimoire
The Official Wild Cubensis Thread
Easy Instant Pot Agar
Let's Talk Cowtek

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Re: Spore cleaning without a centrifuge or agar [Re: Huskies] * 4
    #29132751 -

Keep in mind that we don't know how many of our spores die off when exposed to those temps. That's why I suggested an initially short exposure, and low temperature. To maintain heterozygosity with wild spores this will definitely be a consideration.

So, what we should be focusing on is who can get the best results at the lowest temp and exposure time. I wouldn't go lower than 30 mins, but 1 hour seems reasonable.

All data points are valuable so even if someone chooses longer exposure at higher temps, the results will help plot and dial our preferred outcome.

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Re: Spore cleaning without a centrifuge or agar [Re: Huskies]
    #29132772 -

Yeah I know it might straight up be bunk! I figured knowing that agar times in instant pot are safe for spores in water would be very good to know, and means that sterilization is possible.


--------------------
I call them Huskies cause they Mush!


Huskies' Grimoire
The Official Wild Cubensis Thread
Easy Instant Pot Agar
Let's Talk Cowtek

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Re: Spore cleaning without a centrifuge or agar [Re: Huskies] * 1
    #29132821 -

Sterilization is definitely possible, just not super reliable. But we'll refrain from the dreaded IP talk here. :lol:

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Re: Spore cleaning without a centrifuge or agar [Re: Stipe-n Cap] * 1
    #29132829 -

What about a moistened spore swab in vacuum sealed bag in a sous vide bath at 165f? Or would I want to go higher temps to get to 165f?

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Re: Spore cleaning without a centrifuge or agar [Re: Stipe-n Cap]
    #29132832 -

Stipe-n Cap said:
I've proven the concept for cube spore survival at 160°F, at least (hyperlinked above). We know that vegetative bacteria, yeasts, and molds die at pasteurization temperatures, obviously, otherwise pasteurization wouldn't work; so, with these basic facts combined it seems reasonable that we could get away with it. Dropping the temp down from 160°F to 145°F should provide a greater likelihood of active spore survival, in any case.

145°F for 60 mins will be my recommended basiline, with adjustments made if necessary.


  I'm not quite following the logic in terms of lowering the temperature.  We know that certain competing microorganisms are not going to die at even 160F, and lowering the temp further to 145F is going to even put some into vegetative growth. With this strategy, aren't you potentially enriching for the very microbes you are trying to eliminate?

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Re: Spore cleaning without a centrifuge or agar [Re: SweepHand] * 1
    #29132846 -

Stipe-n Cap said:
Keep in mind that we don't know how many of our spores die off when exposed to those temps. That's why I suggested an initially short exposure, and low temperature. To maintain heterozygosity with wild spores this will definitely be a consideration.

So, what we should be focusing on is who can get the best results at the lowest temp and exposure time. I wouldn't go lower than 30 mins, but 1 hour seems reasonable.

All data points are valuable so even if someone chooses longer exposure at higher temps, the results will help plot and dial our preferred outcome.



We're attempting to pasteurize, not sterilize. Higher temperatures means higher likelihood of destroying the very spores we're trying to salvage. Our aim is to kill vegetative bacteria, mold, and yeast. The likelihood we'll incubate any endospores is unlikely, as they shouldn't be present but even if they were, they're not what we're concerned about.

The objective is to destroy heat sensitive  vegetative competitor organisms while inflicting minimum damage on our active spores.

Having said all of that, there will be absolutely zero difference between 145°F and 160°F, or even 190°F where endospores are concerned, they might as well be the same temperature at these exposure times. Endospores will not reactivate without a growth medium, even at preferred incubation temperatures.

I'll add this to the OP for greater clarity.

Bigworm said:
What about a moistened spore swab in vacuum sealed bag in a sous vide bath at 165f? Or would I want to go higher temps to get to 165f?



Give it a go and see what happens. If that doesn't work maybe try snipping the cotton tip off into a cryo vial with distilled water. I don't see why your suggestion wouldn't work, so long as you can keep it submered.

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Re: Spore cleaning without a centrifuge or agar [Re: Stipe-n Cap]
    #29132889 -

:threadmonitor:

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Re: Spore cleaning without a centrifuge or agar [Re: Stipe-n Cap] * 3
    #29133654 -

Stipe-n Cap said:
The objective is to destroy heat sensitive  vegetative competitor organisms while inflicting minimum damage on our active spores.


This is somewhat similar to the problem of food product pasteurization - you want to minimize the time/temp to maintain the maximum product quality but still achieve 5- or 6-log lethality. Those processes tend to be quick ramps of temp up then down with only a one minute (or even one second) hold time at the target temp.  A typical process might be a rapid ramp to 170F, hold for one minute, then a rapid cool down to 40F. Even though the d-values at 170F might not give 6-log lethality within that one minute, the total process lethality, including the ramps up and down, can add up to absurdly high lethality numbers.

It would be pretty easy to design a thermal process that maximizes lethality of vegatative cells while minimizing damage to mushroom spores if we knew some of the lethality numbers for the spores, or at the very least if we knew the lowest temp at which there is a material level of spore death.

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Re: Spore cleaning without a centrifuge or agar [Re: SweepHand]
    #29133665 -

Yes, absolutely, unfortunately I don't see how we'd determine what percentage of the population would be rendered inactive. That investigation would take some very careful microscopy among other things, I mean, I'd love for that to be achievable but I doubt we have the wherewithal to achieve what would amount to a landmark shroomery achievement.

I'm all ears if you have any suggestions.

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Re: Spore cleaning without a centrifuge or agar [Re: Stipe-n Cap] * 2
    #29133683 -

Stipe-n Cap said:
I'm all ears if you have any suggestions.



I'm a total novice when it comes to plating fungus, so maybe this is stupid, but couldn't you run your different thermal processes then plate serial dilutions of the spore samples so that you are able to get a viable spore count?  Basically like a cfu count on bacterial plates.

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Re: Spore cleaning without a centrifuge or agar [Re: Stipe-n Cap] * 1
    #29133684 -

^^^ beat me to it :smile:

I think one has to start with a centrifuge cleaned clean stock spore solution to get a clean as possible start point. Then use serial dilution to get the spore count down to a manageable amount and pasteurize one sample and leave the other as is. To check for viability the solution goes on agar and be evenly distributed using a cell spreader in front of a flow hood. Those large square petri dishes would be ideal. If you get the concentration down to where the spore count is let's say 100 per square inch once spread out or per drop of solution then you could count out germinating spores and compare. The most complicated part is to get a clean start solution.

Edit: actually getting clean spores is easy, just do an in vitro grow.

Edited by Baba Yaga (02/22/25 01:57 PM)

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Re: Spore cleaning without a centrifuge or agar [Re: Baba Yaga] * 1
    #29133685 -

Or maybe use a selective agar?  Maybe include an antibiotic or something to at least suppress the bacteria?

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Re: Spore cleaning without a centrifuge or agar [Re: SweepHand] * 2
    #29133687 -

If you guy's are willing to put in the work I'm willing to make the popcorn. :lol::popcorn:

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