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Re: Panaeolus subg. bresadolomyces [Re: tree frog]
    #29499019 -

Jakeoncid sent me this years ago,  i didn’t get around to playing with different isolations until now.  Labeled as Pan Indo, and it did take longer than other pans, by a few days.

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Re: Panaeolus subg. bresadolomyces [Re: trippleblack]
    #29499058 -

It's more likely tropicalis than IND01, which is a species that was only sequenced recently and undescribed.

But, the tropicalis holotype has not been sequenced so who knows.

Was that the Indo on the last page?  The shape does look like the trop workman has.  Can you scope a fragment and add more documentation?

Edit:  And keep in mind 90% of the tropicalis pictures posted are likely cyans :lol:

stonesun has some photos of it though.

https://www.shroomery.org/forums/showflat.php/Number/20492704#20492704

The way the stipe thickens up near the cap and is thinner at the bottom like in your photos.  I think it's the same specimen.

www.shroomery.org/forums/showflat.php/Number/22042059#22042059

Pin photos
https://www.shroomery.org/forums/showflat.php/Number/17384630

Also yeah, slower to fruit.


--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Edited by tree frog (02/26/26 05:44 PM)

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Re: Panaeolus subg. bresadolomyces [Re: tree frog] * 1
    #29499083 -

I can’t scope a fragment, I only have spores saved.  A few more isolated cultures are on grain now, so I’ll take a closer look next harvest; i tossed the pic fruit.  If it’s a tropicalis that would be great, will have to take a closer look once I have fruits.

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog]
    #29502908 -

Reposting from the Pan cultivation thread for documentation.

tree frog said:
Panaeolus cyanescens make stones in my current AIO jar recipe.  This is one of a few jars doing it, but the other ones fruited and I this one didn't want too.  So I got curious and tore it apart.  Maybe the biochar or a combination of it and grass seed etc.  But I can imagine the char upregulating sclerotia production to protect against possible fire.




Maybe I'll make some popcorn jars with a bit of char and grass seed to see how they do.




--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Edited by tree frog (03/05/26 04:28 PM)

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog] * 2
    #29504935 -



Blast results from the chlorocystis I'm running.  Also includes SAO2 and IND01.  The latter is more distant from cyans and bisporus than they are from each other.  SAO2 is quite close to Coleville.  And several of the Italy specimens sequenced close to axfordii.

Granted, I'm still learning how to do this and relied on blast to do the alignments.  And tossed out anything that was obviously out of place.

The one cambo sequence in there was identified by Pollock.  And genetically it's indistinguishable from a cyan.  Which doesn't surprise me considering how easily they  interbreed and that they share habitat.


--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Edited by tree frog (03/05/26 04:27 PM)

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog] * 1
    #29506944 -

Tropicalis is annoying :lol:  This is the only specimen I know of on that's ever been in circulation that matches holotype microscopy on iNaturalist.

Posting this here, but also I will move this into the tropicalis species post.

Workman said:
Panaeolus (Copelandia) tropicalis has been a thorn in my side for ages.  The published descriptions are vague, conflicting in some details and in French and German.  After examining dozens of collections, I was beginning to suspect that P. tropicalis wasn't even a real species and just a variety of P. cambodginiensis

BUT!!! now that I have actually seen one, its completely obvious when viewed under the microscope.  I instantly knew something was different when I first placed the specimen under the microscope, even at 100x magnification.  The metuloids (pleurocystidia) are nearly solid black (actually a very dark reddish brown).

I'll be putting together a microscopy guide for the 4 species of Copelandia (cyanescens, cambodginiensis, bisporus and tropicalis) for future reference.

Notes below:

Andaman Islands, India




This specimen has exceptionally thick walled Pleurocystidia, which is characteristic of Panaeolus tropicalis.  This is the first convincing specimen I have observed so far.  The specimen is badly contaminated and decayed.  No cheilocystidia were observed but are assumed to be present.  Isolation attempts to procured a more pristine specimen are underway.

From Gerhardt: (translated from German)
Quote:
Panaeolus tropicalis is mainly characterized through the typical form of the Metuloids. Their thick-walled shape and the conical top which is later completely filled with wall material are unique within the subgenus.



Drawing of P. tropicalis metuloid from Gerhardt


For comparison, the image below is what could be considered a typical Copelandian metuloid.  This example is P. bisporus but P. cyanescens looks nearly identical.




Previously I had misidentified a specimen of Panaeolus cambodginiensis as P. tropicalis in this thread.

http://www.shroomery.org/forums/showflat.php/Number/6950069#6950069 



stonesun said:
Panaeolus tropicalis


Comparison between (L-R):
Psilocybe cubensis - Panaeolus cambodginiensis/Goliath - Psilocybe galindoi - Panaeolus tropicalis - Psilocybe tampanensis
     



stonesun said:
Panaeolus tropicalis

     



stonesun said:
Panaeolus tropicalis
Havelock Island, Andaman Islands, India from the tripsis collection.

Rye grain spawn to pasteurized manure based substrate.
Pasteurized cactus soil casing.
Very fast colonization and even faster pinning.

Only pins, but I gotta post it because somehow I'm excited about this.

On agar:

   

Ready to case:

 

First pins after just 5 days:

   

   

   

Day 2:

   

   

   

    [url=https://files.shroomery.org/files/12-50/541358058-DSC04311_Copy.jpg][/url



I don't believe RDU or any of it's crosses are tropicalis.


--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Edited by tree frog (03/05/26 04:27 PM)

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog]
    #29507398 -

Thank You Thank You Thank You Tree Frog!
What a beautiful curated collection of Pan information and images of phenotypes and morphology.

I came to look at the Mystery SA section in particular (beautiful photos and grows!), but it’s all amazing. If I were ever fortunate enough to find an undocumented pan - well I think a Tree Frog moniker of some kind is in order.
😊


--------------------
What are they saying? Listen carefully, it might be something you need to hear...




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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: PsiloPsychIn]
    #29507520 -

:bashful:

I wouldn't be here if it wasn't for kind folks like you, baba, and everyone else who paved the way, helped me get into them, and so generously got prints out into the community.

So thank you!!


--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog] * 1
    #29509317 -

Putting these here until I can grow them out and have more observations.

Print labeled bisporus spain.




--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog] * 1
    #29533941 -

Couple more observations of the Spanish specimen.  I did go back and scope the mother plate to check for bacterial ride alongs.




The mycelium is a lot denser than the West Coast species.  Here's a clone showing typical mycelium at this stage of growth.



The spore size and shape of the two is quite similar though.


--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog]
    #29533956 -

tree frog said:
Couple more observations of the Spanish specimen.  I did go back and scope the mother plate to check for bacterial ride alongs.




The mycelium is a lot denser than the West Coast species.  Here's a clone showing typical mycelium at this stage of growth.



The spore size and shape of the two is quite similar though.



Are you gram staining or can you see them without?

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: fahtster]
    #29533968 -

I don't use stain, but adjust my condenser.

Bacteria I usually spot by motion though, and on a plate that's been sitting in my dish pile they might be dormant.

I'll scope the plate above soon and drop some koh on it once it grows out a bit more, that usually gets the bacteria going  :lol:

Either way, none of this is conclusive. I'm more recording observations.  If the fruit bodies and colony behave like the West Coast species, and the gill fragment and spore size matches, I'll dismiss the mycelium difference.

But the plate looks halfway between Pan India and Pan cyans :shrug:  Could be a two spored cyan variant even.  But it hasn't done much anything in the way of puffy blue spots.


--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Edited by tree frog (04/01/26 01:29 PM)

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog] * 1
    #29542387 -

Incredibly interesting thread. Thank you for compliling all of this information - that's a lot of work! I'll be following for future updates.


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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: Hoggorm]
    #29555033 -

'Bispo spain' and West Coast bisporus on the bottom.



Also a friend shared some fruit photos with me. I think these might really be tropicals :lol:

Which would be a fun twist.  Hopefully we'll find out in a couple of weeks when I get a chance to scope them.

But the fruit bodies looked very similar to stonesun's tropicalis grows.  And nothing like the West Coast species.


--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Extras: Filter Print Post Top
Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog] * 1
    #29581475 -

Spanish bisporus didn't fruit, cabin sequestered and trying those cultures again (they look better and are back in fruiting).

Some spore microscopy from a potential tropicalis from Noah Keeper.






Germinating so we'll see.  But I have high hopes from the fruit body photos.

Noah Keeper said:
first I thought maybe some wild species growing along



Noah Keeper said:

Panaeolus tropicalis




--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Extras: Filter Print Post Top
Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog]
    #29612106 -

Looks like another not trop so far.  The fruit isn't completely mature and it's possible the metuloids will darken a lot in the next couple of days as immature fruit metuloids can look like cyans according to the tropicalis keys.

But I found no metuloids that resemble workman's microscopy or Scott's observations of the holotype posted on iNaturalist.

See this post for details.

https://www.shroomery.org/forums/showflat.php/Number/29506944#29506944

Anyway, if it's a cyan, I got some more nice cyan photos 🤷‍♀️








--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Extras: Filter Print Post Top
Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog]
    #29612117 -

Pulling some posts from when I tried to get this project going before.  My recent microscopy is better and so is my camera.  But I'm going to include these for posterity and ease of reference.

This first one is what we're now calling 'not trops'.  Since I put this post together I did learn a lot more about tropicalis and found better reference photos.  I would say this is a cyan, with the cambo phenotype.  Note I don't believe cambos are a separate species, as they share habitat with cyanescens, easily interbreed, and so far the one ITS sequence from a Pollock cambo specimen matched cyanescens.

Quote:
Panaeolus tropicalis - unconfirmed (?)
Section Cyanescens - confirmed by microscopy
Source - bra/pheno

Pan tropicalis (possibly needs sequenced, genetics through bra/pheno).  Ran on popcorn and phase 2 compost.  1:4.  Peat based casing (like a cyan aside from temp preference).

Better morphology at 74-76f then 80f.  Knots heavily on plates.  Cords visible.




Fruits yellow under black light when dry.



And look like this.  (On other phone, will add)





Second flush.


Third.



First flush at 80f



Microscopy 3rd.  No basidia observed clearly.  Possibly two or four in these photos.




Spores and metuloids.









--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Edited by tree frog (06/27/26 06:48 AM)

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog]
    #29612119 -

Pan Oregon.  Very likely cyan but unsequenced.

tree frog said:
Panaeolus ? - Oregon, species unconfirmed
Section Cyanescens - confirmed by microscopy
Source - wild collection, Portland, OR

Ran on popcorn and phase 2 compost.  1:4.  Peat based casing (like a cyan aside from temp range).

Better morphology at 80f then 74-76.  Cords visible.  Possible sclerotia like structures on plates.

Mycelium




Outdoor fruits 70s




90s


Indoor fruits mid 70s


80


Yellow green under black light



Microscopy - Metuloids and four spored basidia visible.






Original thread here.

https://www.shroomery.org/forums/showflat.php/Number/29207602

tree frog said:








Siphonophorest said:


































So here are some pictures of the original collection, I’m not sure where the Peace River comparison originated, I never said that. I don’t think I ever posted any pics of these before, as I didn’t think they were the best photos although I took a shit ton, none of them seemed very good to me.




--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Extras: Filter Print Post Top
Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: tree frog]
    #29613296 -

Mind explaining unsequenced n what it means n methods to sequence something n benifits of it?


--------------------





An enigma some caerulescens n a mono 😎

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Re: Panaeolus subg. copelandia microscopy and mycology thread [Re: bloodssonnew] * 1
    #29613476 -

DNA sequencing.

I don't know the method, it's beyond my skill set.

But there are labs in the US that will sequence mushrooms free of charge if they're found in the US and the find is documented on iNaturalist.

https://mycomap.org/

I imagine there's labs that will sequence other stuff for a fee, but I haven't looked into that.

Generally for Copelandia, an Internal Transcribed Spacer is used to differentiate species.  Which is the spacer DNA situated between the small-subunit ribosomal RNA (rRNA) and large-subunit rRNA genes in the chromosome or the corresponding transcribed region in the polycistronic rRNA precursor transcript.  (And I don't understand it enough to explain it better, that's copy pasted).

https://en.wikipedia.org/wiki/Internal_transcribed_spacer

ITS sequences are then often listed on iNaturalist with the find.  Or iNaturalist will be cross referenced on genbank.

https://www.ncbi.nlm.nih.gov/

And these sequences can then be ran through a nucleotide comparison tool called BLAST (basic alignment search tool).

https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome

I like to use several sequences to build a picture.  As just comparing two separate samples will only tell me how related they are but doesn't give me much in the way of when and where they split off from each other.

We can see from this tree, that if the tropicalis sample from China was correctly identified, that real tropicalis is pretty distant from cyanescens.  A misidentified axfordii being uploaded as tropicalis would be another possibility, but axfordii is distinct in lacking metuloids.  And tropicalis in them being very dark.

It's also important to note that axfordii is four spored, while other species more closely related to it are generally bispored.  Tropicalis has also been observed to have primarily four spores, so it would make sense for it to be situated here.  As it would be less likely to breed with cyanescens and become genetically homogeneous over time.



Note that this tree was made yesterday as I was discussing with some friends the possibility of cambodginiensis being a phenotype of cyanescens rather than a separate species.

Based on how close the sequenced specimens are to cyanescens, ease of breeding them with each other, and shared habitat.


These are cambo phenotype metuloids.





And cyanescens phenotype.








But this sample is the same culture.  Just different expressions in two different fruit bodies.


--------------------
And if I only could
I'd make a deal with God
And I'd get him to swap our places
I'd be running up that road
Be running up that hill
With no problems

Edited by tree frog (06/29/26 08:08 AM)

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