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OfflineAlan RockefellerM
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Full genome sequences of 17 psychoactive fungi * 5
    #27072297 - 12/04/20 05:32 PM (3 years, 3 months ago)

I have been able to find full genome sequences for 17 psychoactive fungi:

Amanita muscaria var. guessowii https://www.ncbi.nlm.nih.gov/assembly/GCA_001691765.1
Claviceps arundinis https://www.ncbi.nlm.nih.gov/assembly/GCA_004016465.1
Claviceps fusiformis https://www.ncbi.nlm.nih.gov/assembly/GCA_000223055.1
Claviceps humidiphila https://www.ncbi.nlm.nih.gov/assembly/GCA_004016155.1
Claviceps paspali https://www.ncbi.nlm.nih.gov/assembly/GCA_013435705.1
Claviceps purpurea https://www.ncbi.nlm.nih.gov/assembly/GCA_004016165.1
Claviceps spartaniae https://www.ncbi.nlm.nih.gov/assembly/GCA_004016175.1
Gymnopilus dilepis https://www.ncbi.nlm.nih.gov/assembly/GCA_002938385.1
Inocybe corydalina https://www.biorxiv.org/content/10.1101/374199v2.supplementary-material
Massospora cicadina https://www.ncbi.nlm.nih.gov/assembly/GCA_006912075.1/
Massospora platypediae https://www.ncbi.nlm.nih.gov/assembly/GCA_006912095.1/
Panaeolus cyanescens https://www.ncbi.nlm.nih.gov/assembly/GCA_002938355.1
Periglandula ipomoeae https://www.ncbi.nlm.nih.gov/assembly/GCA_000222875.2
Pluteus salicinus https://www.biorxiv.org/content/10.1101/374199v2.supplementary-material
Psilocybe cubensis https://mycocosm.jgi.doe.gov/Psicub1_1/Psicub1_1.home.html
Psilocybe cyanescens https://www.ncbi.nlm.nih.gov/assembly/GCA_002938375.1
Psilocybe serbica https://mycocosm.jgi.doe.gov/Psiser1/Psiser1.home.html



Does anyone know of any other psychoactive fungi which has a full genome sequence available?

If you have data like this sitting around, it would be a good idea to publish it (perhaps on https://biotorrents.de) so the data is available for researchers, and a corporation can't patent the DNA.  Ideally the data should be uploaded to Genbank too, but there it needs to be annotated so it's a much more involved process that can take months.

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Offlinemycot
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Re: Full genome sequences of 17 psychoactive fungi [Re: Alan Rockefeller]
    #27072380 - 12/04/20 06:14 PM (3 years, 3 months ago)

Genus Periglandula was a new one on me. :lol:
But full sequences for those 17.  Wow.:aweyeah:

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Offlinemycot
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Re: Full genome sequences of 17 psychoactive fungi [Re: mycot]
    #27078110 - 12/08/20 02:34 AM (3 years, 3 months ago)

Goes without saying that this is an impressive list, with most important members of the genus represented.

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OfflinePTreeDish
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Re: Full genome sequences of 17 psychoactive fungi [Re: mycot]
    #27089745 - 12/15/20 12:38 AM (3 years, 3 months ago)

Removing until I have more useful input.

Edited by PTreeDish (12/19/20 10:18 PM)

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InvisibleAndyHinton


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Re: Full genome sequences of 17 psychoactive fungi [Re: Alan Rockefeller]
    #27193913 - 02/08/21 03:31 PM (3 years, 1 month ago)

So glad to see this Alan, and that you're interested in BioTorrents.de! Work's been crazy busy but I'll get these up there ASAP. Thanks for sharing!


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Edited by AndyHinton (02/08/21 03:38 PM)

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OfflineDoc9151M
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Re: Full genome sequences of 17 psychoactive fungi [Re: AndyHinton] * 1
    #27196434 - 02/09/21 09:58 PM (3 years, 1 month ago)

I find it interesting that cubensis is being associated with Africa instead of Asia,  I've often suspected that they were Asian in origin. Does anyone have any idea of why Africa is a better fit?


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Psilocybe cubensis data collection thread. please help with this project if you hunt wild cubensis.
https://www.shroomery.org/forums/showflat.php?Cat=0&Number=26513593&page=0&vc=1#26513593

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OfflineOmnipositive
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Re: Full genome sequences of 17 psychoactive fungi [Re: Doc9151]
    #27196804 - 02/10/21 05:49 AM (3 years, 1 month ago)

Thank you Alan.


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OfflineAlan RockefellerM
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Re: Full genome sequences of 17 psychoactive fungi [Re: Doc9151]
    #27197011 - 02/10/21 09:10 AM (3 years, 1 month ago)

Quote:

Doc9151 said:
I find it interesting that cubensis is being associated with Africa instead of Asia,  I've often suspected that they were Asian in origin. Does anyone have any idea of why Africa is a better fit?




I think it's from Asia too, but Africa is also possible since P. natalensis is so closely related.

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Invisiblemycorry
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Re: Full genome sequences of 17 psychoactive fungi [Re: Alan Rockefeller]
    #27198103 - 02/10/21 07:54 PM (3 years, 1 month ago)

Incredible work!:rockon:


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My Trade Lists

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OfflineLogicaL ChaosM
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Re: Full genome sequences of 17 psychoactive fungi [Re: Doc9151]
    #27204302 - 02/13/21 06:24 PM (3 years, 1 month ago)

Epic info Alan! :takingnotes:

Quote:

Doc9151 said:
I find it interesting that cubensis is being associated with Africa instead of Asia,  I've often suspected that they were Asian in origin. Does anyone have any idea of why Africa is a better fit?




I think this is further evidence that Africa is the country of origin for life for many species, including Humans and Cannabis.


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OfflinePTreeDish
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Re: Full genome sequences of 17 psychoactive fungi [Re: Alan Rockefeller] * 1
    #27306410 - 05/12/21 10:36 PM (2 years, 10 months ago)

A new Psilocybe cubensis complete sequence was added in March 2021:
https://www.ncbi.nlm.nih.gov/assembly/GCA_017499595.1

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