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I ahve succesfuly scooped out contamination with a sterile spoon before. If you want to go that route i would scoop out all uncolonized substrate. And let the mycelium fully bulk up on itself before doing anything with it. Hopefully what it will do is not allow any of the contaminant spores nyou knocked aorund to germinate on its already strong mycelial network (which is why you removed all of the uncolinized substrate)