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Offlinequickpick
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LAB: Isolate and culture Lactic Acid Bactria [BIM part 1]
    #8910533 - 09/10/08 11:54 PM (3 years, 8 months ago)

Hey all,

Lactic acid bacteria (LAB), lactobacillus spp. (what I am referring to in this thread)  are commonly referred to as a BIM "Beneficial Indigenous Microorganism" and could possibly serve a few distinct purposes in use with cultivating mushroom. 

The intentional use of LAB as a BIM in rural horticulture dates back about 70-80 years or so.  LAB has been proven to offer many benefits in composting, horticulure, waste managmnet (manuer), etc.  LAB is either "heterofermentater" (used in EM) or "homofermenter" and LAB is classified as "facultative anaerobic organotrophs".  There are many, many benefits offered by LAB in use with media and horticulture...as for mycology or just growing 'shrooms LAB's benefits are unstudied as far as I know, yet the benefits could be plenty.  Please see the GREAT thread by "Mycelio" which has started this thread, thanks Mycelio!
Grain spawn without pressure cooking

I have not read research on use of LAB and p.cubes or other higher fungals.  At this stage the use of LAB (or any BIM) and higher fungals is very experimental, Mycelio has had success but one should tread lightly IMO and Mycelio noted the same thing too.  In other words we need people to try this out and Mycelio's method too so we can gather more opinions and results.  If it works well we could be onto something...


Benefits attributed to LAB:

  • Dead LAB is a source of food for some higher fungals.


  • LAB has a evolutionary synergistic relationship to many higher fungals and lower fungals (microbes) as LAB is common in many places and in media where higher fungals grow in Nature.  Anaerobic organotrophic bacteria is thought to be part of the "primordial soup" which has given rise to the evolutionary process to todays date...


  • LAB excretes enzymes which ferment grain, bulk subs, etc (organic matter).  Releasing 'bio-nutrients' while the enzymes ferment the media and lower the pH.  The fermentation also softens grain/WBS/etc and may assist mycelium in colonizing grain/WBS/etc.


  • LAB will colonize media and help to 'block' the colonization of the media by harmful microbes.  This is accomplished mainly by LAB's production of lactic acid which "...is a strong sterilizing compound, and [LAB] suppresses harmful microorganisms and enhances decomposition of organic matter. Moreover, lactic acid bacteria promote the decomposition of material such as lignin and cellulose and ferments these materials...".


  • LAB offers zymogenic balance in media such as bulk sub due to it's fermenting ability, etc:
    http://www.agriton.nl/higa.html#21
    Quote:

    Zymogenic Soils:
    These soils are dominated by a microflora that can perform useful kinds of fermentations, i.e., the breakdown of complex organic molecules into simple organic substances and inorganic materials. The organisms can be either obligate or facultative anaerobes. Such fermentation-producing microorganisms often comprise the microflora of various organic materials, i.e., crop residues, animal manures, green manures and municipal wastes including composts. After these amendments are applied to the soil, their number: and fermentative activities can increase dramatically and overwhelm the indigenous soil microflora for an indefinite period. While these microorganisms remain predominant, the soil can be classified as a zymogenic soil which is generally characterized by a) pleasant, fermentative odors especially after tillage, b) favorable soil physical properties (e.g., Increased aggregate stability, permeability, aeration and decreased resistance to tillage c) large amounts of inorganic nutrients, amino acids, carbohydrates, vitamins and other bioactive substances which can directly or indirectly enhance the growth, yield and quality of crops, d) low occupancy of Fusarium fungi which is usually less than 5 percent, and e) low production of greenhouse gases (e.g., methane, ammonia, and carbon dioxide) from croplands, even where flooded rice is grown.




One aspect I really like is the possibility of using LAB (or a BIM mix) within casing to prevent harmful microbes, trichoderma, etc.  This could mean the pH may not have to be increased in casing which should be beneficial for mycelium that often prefers a slightly acidic pH of around 4.5-6. 

Up next: Step-by-Step Guide :smile:


Edited by quickpick (09/11/08 01:26 AM)


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Offlinequickpick
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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8910543 - 09/10/08 11:56 PM (3 years, 8 months ago)


Step-by-Step Guide:

(a) Collect microbes from air; (b) isolate LAB; (c) culture LAB :thumbup:





Note: 
  • All credit for the original idea/method of using rice wash and skim milk to isolate LAB goes to "Gil A. Carandang", of http://www.herbanafarm.com/Herbana2/  I have made many 'adjustments' to his method which should provide better results.

  • I've attached pictures I have to date, I will update in a few days with new pics and when I strain and add food, etc. 

  • I uploaded a nice PDF called "Introduction to Bacteria" to flyupload as a WinRaR compressed file.  I mislabeled it "working-w-bacteria", you can download the file HERE.  You need to use WinRar or 7zip to decompress and decrypt the PDF with the password: quickpick
 



The fun part!! :rocket:



  1. Parts needed: (I prefer organic when possible)

    -Organic blackstrap molasses (unsulfured) [try to find it's brix level, it's best to be at 80-90 brix] $8-10.00

    -Organic white rice (I use jasmine), 1 pound $2.00

    -Organic skim milk (unpasteurized fresh milk is ideal), 1 pint (or more) $5.00

    -pH pen, a pool kind is fine (from WallyWorld or China via ebay) $20.00

    -Gallon of distilled water (or water without chlorine or chloramines) $2.00

    -Sieve (pasta strainer) $3.00

    -A few quart jars (or gallon for more serum)

    -Coffee filter

    -Cheese cloth

    -Empty plastic gallon of water

    -Double fermentation air-lock and bung to fit gallon mouth (optional) $3.00

    -Dark space where temperature is about 75-85F (25-30C)


    Some items:




    Double Air-Lock (from beer brew store):



    Bung (from beer brew store):




    Air-lock in action (the pic is fermenting AEM not LAB and the wire is for a fish tank heater):







  2. Fill jar 1/2 way with rice




  3. Fill jar 3/4 full with water



  4. Put on lid and shake for a few minutes and let it sit for a minute or two.




  5. Strain rice and collect "rice wash" water.



  6. Fill jar 1/2 full with rice water and cover with coffee filter, etc (FAE air is important, that's where we get the LAB from)



  7. Place in dark and warm space for 5-7 days.



  8. A thin film of rice bran, etc will form on the surface and it should smell a bit sour.  Strain the rice wash through a a layer or two of cheese cloth folded upon each other to filter out the film but NOT filter out the LAB. 


  9. Pour the filtered rice water into another jar and add 10 parts milk to 1 part filtered rice water.  The lactic acid in the milk precludes non-LAB microbes, thus isolating the LAB.  Fill the jar until there is about an inch or two of room between the water and lid (we want to limit FAE at this stage).  Place the cap on the jar and loosen 1/8 turn to allow gases to escape.


  10. Place back into warm, dark room for another 7 days.


  11. After 7 days or so the carbohydrate, protein and fat from the milk will have separated and floated to the top, like a layer of bad milk or  curd.  Blow that layer is the LAB serum, it should be yellow in color.

    (day 2)



  12. Scoop off or strain out (with cheese cloth) the layer of milk byproduct and dispose of or place in compost pile, etc.


  13. The resulting LAB serum is the so-called "mother culture" and is synonymous to a 'master culture'.  The mother culture can be placed in the refrigerator for storage as the LAB are not very active at this point.  The mother culture should stay viable for few weeks or more because the LAB are pretty much dormant at this stage. 


  14. To use the LAB we need to feed and 'wake up' the LAB so they will multiply.  Blackstrap molasses is a great food source for LAB. We need to mix LAB, blackstrap molasses and water with a ratio of 1:1:10.  This ratio equals about 8-8.5% blackstrap molasses.  The result of feeding the LAB creates a "pure culture" of tens to hundreds of thousands (or more) of active LAB.  The pure culture is then further and finally diluted to a ratio of around 1:20 (LAB pure culture to water) and then applied to media, etc.


  15. Measure and pour distilled water into a pot and heat on  stove until water is about 90-95F. 


  16. Divide the volume of water you measured and heated by 20, this equals 1 part for molasses.  Measure the molasses and dissolve into heated water. 


  17. Remove from heat and allow to cool until around 85-90F.


  18. Divide the volume of water you measured and heated by 20, this equals 1 part for LAB mother culture.  Measure the mother culture and  mix into water/molasses. 


  19. Pour mix into gallon water jug.  Leave about 1/2 of "head space", that is the air space between fluid and lid. 


  20. If you don't have an air-lock then put on lid and tape in place with duck tape.  The tape is IMPORTANT, the LAB pure culture can shoot out of the jug due to pressure from gas build up, that's why you need the cap on TIGHT! lol.  I definitely suggest the air-lock method.


  21. Put in warm and dark space for about 7 days and shake once or twice on day 1 and 2.


  22. On day 3 or 4 you may need to 'burp' the jug to release Co2 and other gases created during fermentation.  The jug may look bloated, that is a sign it needs to be burped.  Try to limit the oxygen you allow back into the jug.


  23. After day 5-7 the pH should have dropped below 3.5-4.0.  If so the LAB pure culture is ready to use!


  24. To apply the LAB pure culture a ratio of 1:20 (pure culture to water) is often used.  This should speed up the fermentation process and media colonization too.  One could try stronger dilutions like 1:5 or 1:10 for say fermenting grain without pressure cooking or when saturating h.poo or casing for a fast colonization.


  25. The pure culture needs to be used within about 2 weeks.



There are methods for keeping the mother culture going by removing 1/4 of the volume and replacing that with 1/8 distilled water and 1/8 fresh LAB mother culture.  This can be done every few weeks or once a month.  The same idea can be applied to keeping a constant pure culture going; similar to the idea of "feed batch" but is not generally suggested.  But, as it's easy to make I just make up like a 1/2 gallon of LAB mother culture and use it till it's gone, then I make fresh mother culture.

One issue I am thinking of is the fungals metabolites and that of the LAB, namely lactic acid.  I'm curious if it will negatively effect pH.


HTH :smile:


Edited by quickpick (09/20/08 03:57 PM)


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Offlinequickpick
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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8910620 - 09/11/08 12:12 AM (3 years, 8 months ago)

Good info and reading:

[This booklet has the original directions by Gil A. Carandang for isolating LAB via rice wash]
"Indigenous Microorganisms: Grow Your Own: Beneficial Indigenous Microorganisms and Bionutrients In Natural Farming"
by Gil A. Carandang of Herbana Farms



"Using the ordinary to cultivate the mysterious power of beneficial indigenous microorganisms"
A report about Gil A. Caradang


HTH :smile:


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Offlinequickpick
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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8910653 - 09/11/08 12:22 AM (3 years, 8 months ago)

One last pic before I have to go:

Tomorrows chore:  Mixing and pasturing h.poo, vermicast, composted chicken and cow poo and alfalfa meal (some with gypsum and some with MetaNaturals Calcium for a test)...can't wait, I've got maybe 150lbs of h.poo and a bad back! :rolleyes:



Edited by quickpick (09/11/08 12:24 AM)


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8910716 - 09/11/08 12:54 AM (3 years, 8 months ago)

Hey all,

If anyone notices any errors or inaccuracies please let me know.  Any thoughts, ideas for improvement, etc, are very welcome, thanks!  Quickpick

:cool:


Edited by quickpick (09/11/08 12:55 AM)


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8910822 - 09/11/08 02:19 AM (3 years, 8 months ago)

This is very interesting. I would, however, like to point out that in the 19-21 days it would take to do this, one could easily save up the money to buy a decent pressure cooker.

Don't mean to put down this idea as it is very neat and could lead somewhere. :smile:


--------------------



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Offlinequickpick
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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: Cakes]
    #8911592 - 09/11/08 08:48 AM (3 years, 8 months ago)

Hey Cakes,

Yea you could buy a PC but where's the fun in that?  And I'm pretty sure a PC was not part of the primoridal soup :wink:

No worries, I don't think your putting it down.  You should try it!

Later :smile:


Edited by quickpick (09/11/08 08:54 AM)


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8911868 - 09/11/08 09:44 AM (3 years, 8 months ago)

Hey Quickpick,


thank you for collecting information and providing step by step instructions for culturing LAB! As soon as I find the time, I will try myself. I'm quite curious about the fermentation of horse manure.

Regarding fermentation of straw I found some interesting PDF.
'Effects of Water-Soluble Carbohydrate Content on Silage Fermentation of Wheat Straw'
http://www.jstage.jst.go.jp/article/jbb/101/3/101_232/_article
They tested the effect of various amounts of added sugars on PH, lactic acid and side products. Seems like 7 to 10% sugar (compared to dry mass) works best.


@Cakes
Sure, in developed countries and with enough income, it is easier and faster to buy a PC and cook some substrate for 90 minutes, but maintaining sterility afterwards is always a challenge. Each microbe that enters while inoculating might screw up the complete bag or jar. Now I am fascinated by the robustness of fermented substrates, which you can process with bare hands and 'open air' as well as the saved energy. Don't know the exact amount of energy needed to PCing or for making a pressure cooker from iron or aluminium ore, but with LAB you need nothing but patience.


Greetings, Carsten


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8911894 - 09/11/08 09:55 AM (3 years, 8 months ago)

Quote:

quickpick said:
Hey Cakes,

Yea you could buy a PC but where's the fun in that?
Later :smile:




Not to mention that experiments like these are hardly ever very useful at the beginning.  What we need is a proof a principle (which you are doing here) and then the kinks get worked out and then BAM.  Suddenly you got people growing 8 foot cubes. 

Good job.  If you need any lab stuff let me know.  If I have it I'll ship it to aid in the process. hmmm I wonder if LAB has been transfected to be pen/strep/kan resistant.


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: Mycelio]
    #8915738 - 09/11/08 09:50 PM (3 years, 8 months ago)

Hey Mycelio,

How ya doing?

Quote:

thank you for collecting information and providing step by step instructions for culturing LAB! As soon as I find the time, I will try myself. I'm quite curious about the fermentation of horse manure.




You welcome.  Yea me too, LAB just loves manure :smile:


Quote:

Regarding fermentation of straw I found some interesting PDF.
'Effects of Water-Soluble Carbohydrate Content on Silage Fermentation of Wheat Straw'
http://www.jstage.jst.go.jp/article/jbb/101/3/101_232/_article
They tested the effect of various amounts of added sugars on PH, lactic acid and side products. Seems like 7 to 10% sugar (compared to dry mass) works best.




Nice study, thanks! :smile:

Yes that's sounds right, but they are using glucose so I assume measuring by weight.  That's good to know but hard to put into practice when one would first need to know the DW of the matter to be fermented.  Another thing which would make this difficult to put into practice is one would first need to know the inherent WSC of the matter to be fermented.  Then glucose is added, taking into calculations the inherent WSC content to make the 'new' (for lack of a better term) WSC content equal  >7-10% of DW.  So if I understand the methods correctly it would be hard to impossible for average people to manipulate the levels of WSC as per the study.

Another point worth mentioning is what they are doing is more similar to what you did with your grain thread.  They are relying on "endogenous" microbes (LAB) from the wheat straw (and air too?) to naturally ferment the matter, they did not apply an already highly active LAB 'pure culture'.  When they talk about adding glucose it's to feed the LAB because the inherent WSC of the wheat was not sufficient to feed the LAB so they could multiply and ferment.  This is why I originally suggested to you that you may want to add black strap molasses to your jars while fermenting your grain.

What we are doing with pure cultures (LAB, BIM mixes, AEM, etc) is adding microbes (LAB in this case) in massive quantities which are already being feed and are very active, releasing enzymes, lactic acid, etc.  We don't have to rely upon endogenous LAB so the process of fermentation is generally faster and more efficient.  As is the LAB's ability to 'block' harmful microbes by colonizing the media really fast, before other microbes get the chance to take hold, and by virtue of lactic acid.

For use with LAB and other BIM (AEM, FPE, etc) a suggested 'benchmark' (if you will) is a brix level of 9-11.  And a 1:1:20 ratio with black strap molasses (80-90 brix) is approximately 9-11 brix.  A higher brix level will slow the pH drop and is used in special applications a bit out of scope of this thread.  When a brix level of 11 is used there is a good bit of carbohydrates left over after the pH drops below 3.5. (when the BIM is ready to use).  The left over carbohydrates serve as food for the microbes which assists them while fermenting matter like grain, etc.  So in other words when we ferment a BIM or AEM with black strap molasses we doing the same thing (albeit in a different manner) as the study above:  Increasing the quantity and effectiveness of LAB and their fermentations.

HTH :smile:


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: cheesenoonions]
    #8915902 - 09/11/08 10:32 PM (3 years, 8 months ago)

Hey CnO,

Nice nick :smile:


Quote:

Not to mention that experiments like these are hardly ever very useful at the beginning.  What we need is a proof a principle (which you are doing here) and then the kinks get worked out and then BAM.  Suddenly you got people growing 8 foot cubes.




There is a lot to be learned from failure, more then from success in most cases IMVHO :wink: .  That said, I do have high hopes and high expectations, but I'm also expecting failure. 

Man, how amazing would that be?  8 foot tall cubes, lol.  Like Alice in Wonderland!


Quote:

Good job.  If you need any lab stuff let me know.  If I have it I'll ship it to aid in the process.




Thanks. 

Well now you mention it, I do have a shopping list.  If you have any items you could send that would be great!

Most items are for a control BIL (Basic Isolation Liquid) I'm not using "Basic Isolation Media", aka "BIM" because it too confusing with the other term of BIM.  While testing isolation of PnSB from Natural water with my DIY method I want to use a proven isolation method as a control.  Though I've already provided proof of concept and collected water from Nature, isolated, and then cultured PnSB with hydrolyzed fish and distilled water. (that thread will be part 3 of my "BIM" series).



Shopping list:
  • (NH4)2SO4

  • K2HPO4

  • MgSO4

  • NaCl

  • Yeast extract

  • Glycerol



Thanks :smile:


Edited by quickpick (09/11/08 10:56 PM)


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8915915 - 09/11/08 10:37 PM (3 years, 8 months ago)

Oh,

And a PDF for the geeks: (password: quickpick)
Lactic Acid Bacteria-Carbohydrate and Protein Metabolism


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8916517 - 09/12/08 01:51 AM (3 years, 8 months ago)

Hi Quickpick,


sure, I realized they were doing the same as you by adding molasses, just thought it would be interesting because of their measurements of side products, especially alcohol and carboxylic acids. That study on straw mentions an initial sugar content of 1.4%. If we assume dry straw to have a water content of 5 - 10%, it is not too hard to estimate roughly how much sugar to add.

As grain should have a sugar content of around 10%, I favor fermenting without adding sugars.

I only wonder about the initial sugar content in horse manure...


Carsten


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: Mycelio]
    #8917176 - 09/12/08 07:18 AM (3 years, 8 months ago)

Hi Mycelio,

Quote:

sure, I realized they were doing the same as you by adding molasses, just thought it would be interesting because of their measurements of side products, especially alcohol and carboxylic acids. That study on straw mentions an initial sugar content of 1.4%. If we assume dry straw to have a water content of 5 - 10%, it is not too hard to estimate roughly how much sugar to add.




Yea that was an interesting study.  And good point about general % of moisture and WSC.  But, the WSC content of matter is pretty variable, depending upon many factors like harvest time, nutrients provided, "terroir" of the growing location, etc.




Quote:

As grain should have a sugar content of around 10%, I favor fermenting without adding sugars.




I'm not sure of the WSC content of grain, is it just rye with a 10% WSC content?  The content of WSC depends a good deal on how the matter was grown and if it was healthy.  And if the matter was offered additional carbohydrates while it was growing it's resulting WSC will be higher.  Generally using an immediately available source of carbohydrate will speed up fermentation as there is no lag waiting for the WSC to become available. 


Quote:

I only wonder about the initial sugar content in horse manure...




Yea, and it's pretty variable depending upon what they ate and the WSC content of the food they ate.


My 2 cents..

Thanks buddy! :smile:


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8922336 - 09/13/08 04:54 AM (3 years, 8 months ago)

Well now. This is going to be fun.


--------------------


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: JaComet]
    #8922930 - 09/13/08 09:09 AM (3 years, 8 months ago)

Nice thread there bro, I'm going to add my 2 cents here:
We know that an AEM culture  of 1:1:20 uses about 4.5% molasses by volume and an AEM culture  of 1:1:10 uses about 8.5% molasses by volume so I think it is safe to say if we can get the initial molasses volume in that range then we will be good to go.

Also our buddy springs said to me the other day that perhaps it is a good idea to use the grain you plan on using for spawn as your BIM source, or better yet make many BIMs using various grains for maximum diversity. I think the seed/grain from most grasses which grow in good organic soil will be good source of lactobacillus etc. There is also all the members of the brassica family which have copious amounts of lactobacilli on their leaves. Perhaps canola seed, which is a brassica, would be another good choice for a source of LAB, while the fermented canola grains leftover after straining off the LAB liquid might be useful as a fungi growing supplement.


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: mycomon]
    #8924972 - 09/13/08 05:27 PM (3 years, 8 months ago)

Hey mycomon,


Quote:

Nice thread there bro,




C? Is that you? :smile:
(with you, springs and I over here it's like a little CW)

If you are who I think you are then forgive me when I post a little bit of 'basic' info within my response to you.  The info is for the greater audience reading, not for you per say.


Quote:

I'm going to add my 2 cents here:




Your input is always wanted, thanks.  I think Tim might find this interesting too and I'd love to read his thoughts.



Quote:

We know that an AEM culture  of 1:1:20 uses about 4.5% molasses by volume and an AEM culture  of 1:1:10 uses about 8.5% molasses by volume so I think it is safe to say if we can get the initial molasses volume in that range then we will be good to go.




A few things:

  • Do you mean to add 8.5% molasses to LAB mother culture when fermenting a pure culture?  Good idea.  But, not all molasses is created equal.  That is why I suggest sourcing molasses with 80-90 brix, then we can feel confident suggesting to people what % should be used as we know it will turn out to be about the same final brix score.
    (NOTE: I stole the 80-90 brix figure from Vinny Pinto but I've found it to be a very accurate statement.  My molasses is 82 brix.)


  • I've been thinking about that for a while, 1:1:10 vs 1:1:20, etc.  Recently I've been using 1:1:16.  But, as far as I understand the quantity and activity of microbes will be same at 10 or 20 over the long term (few weeks), in the short term the higher diluted ratio (20) generally produces higher quantity of microbes.  At a lower dilution ratio (10) there is a longer shelf life and longer fermentation (if one was doing a long term ferment, say 3-4+ weeks).  This is where data is lacking. What are you thoughts?  Would you run some trials for us and check the results under your scope?




I am going to run a few trials to compare the fermentation provided by 1:1:10 vs 1:1:20 (4.5% vs 8.5%).  My method of comparison will be the % of organic matter (ex. rye) which has been 'digested' by microbes via enzymatic action (e.g. fermentation).  While the amount of digested organic matter isn't really a great indication of fermentation level (or strength) it should give us a useful idea of the effects of stronger and weaker levels of carbohydrates.  Once we know which level of carbs is optimal in regards to organic matter digestion I would feel OK suggesting that level of carbs.  The reason I am wary of too high of a level of carbs is there is a point of diminishing returns, 8.5% maybe too strong, or 4.5% maybe too weak...fun times!


Here's what I propose:
(in this example I'm using LAB, but AEM, BIM mix, etc are interchangeable)

  1. Ferment two different LAB pure cultures, one with 4.5% (1:1:20) and one with 8.5% (1:1:10).  LAB pure cultures are taken from same mother culture.

  2. Place organic matter (rye, WBS, straw, h.poo, etc) onto a cookie sheet and place in oven at 175-250F for 24-48+ hours.  This should remove all internal moisture content from organic matter.

  3. Weigh out four equal amounts of: rye, WBS, straw, h.poo.  Record weight measured.

  4. Individually ferment rye, WBS, straw and h.poo in 4.5% and 8.5% pure cultures, and two control samples of distilled, boiled water. (all weights of organic matter and volumes of liquid are the same)

  5. Ferment for a few weeks to a month or more(low o2, 75-90F).

  6. 2 hours before draining out organic matter add 4% lab grade phosphoric acid.  This kills the microbes and stops enzymatic digestion.  --Citric acid can be used but I'm unsure of application rates.

  7. Drain off liquid and place organic matter on cookie sheet.  Place cookie sheet into oven at 175-250F for 24-48+ hours until all internal moisture is removed. (I am going to carry out many of these trials in small samples so I can test on different days)

  8. Weigh samples again.  Lightest samples most likely had the greatest digestion by enzymes, acids, etc.  IMO the lightest would probably also have the greatest amount of fermentation.  Thoughts?



Quote:

Also our buddy springs said to me the other day that perhaps it is a good idea to use the grain you plan on using for spawn as your BIM source, or better yet make many BIMs using various grains for maximum diversity.




Yea that might be a good idea, this is my current line of thinking:

  • I like the idea of few different BIM's with different grains, seeds but I also want to use the BIM on bulk sub and casing too.  Maybe a grain and/or seed spawn BIM/s and a bulk sub BIM, etc.  But I fear if we get too involved a lot of people may not bother...hummm.

  • We could isolate LAB from h.poo in a 'h.poo wash', if you will.  We could use slightly aged pasture collected h.poo to make a LAB pure culture for h.poo bulk sub.

  • The LAB used in the LAB mother culture comes from the rice (rice wash) and the air.  LAB from grain would also come from the rye wash and the air.  IMO we would always have a certain amount of non "phyllosphere" LAB in the grain/seed BIM.  Though IMO that's a good thing because the non phyllosphere LAB would be indigenous LAB from the air, hopefully from a location near the growing fungals. 

  • I think rice is a good organic matter to suggest as a standard as it can be found by nearly anyone, anywhere in the world and is generally inexpensive.

  • (This IMO maybe a show stopper for grain)
    The big issue IMO is endospores which are present in grain and seeds.  The are very resilient to chemicals and acids, etc.  So in my mind they could get shaken and filtered into the 'grain wash' where they will sit dormant.  Then when the milk is applied its lactic acid precludes other active microbes except LAB and the dormant endospores.  When molasses and water is added the endospores would become active and multiply in competition with the LAB.  I assume some of the bacteria from endospores is not beneficial..  Thoughts?  Errors in my line of reasoning?

  • Rice has very few to no endospores.




Quote:

I think the seed/grain from most grasses which grow in good organic soil will be good source of lactobacillus etc.




Yea I agree, LAB is very widespread.



Quote:

There is also all the members of the brassica family which have copious amounts of lactobacilli on their leaves. Perhaps canola seed, which is a brassica, would be another good choice for a source of LAB, while the fermented canola grains leftover after straining off the LAB liquid might be useful as a fungi growing supplement.




Good idea.  I wonder how canola seed is as a spawn sub.


Thoughts?


THanks!  :smile:

P.S. I plan on posting this at your site too but not for a few weeks and I need to edit it for more general use than just focused on fungals.  I am going to include some posts of members like you and mycelio (if he's OK with that), etc.


Edited by quickpick (09/14/08 03:43 PM)


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: quickpick]
    #8926970 - 09/14/08 01:31 AM (3 years, 8 months ago)

Hey Quickpick,


just two things about your planned experiment...

Quote:

Here's what I propose:
(in this example I'm using LAB, but AEM, BIM mix, etc are interchangeable)
  1. Ferment two different LAB pure cultures, one with 4.5% (1:1:20) and one with 8.5% (1:1:10).  LAB pure cultures are taken from same mother culture.

  2. Place organic matter (rye, WBS, straw, h.poo, etc) onto a cookie sheet and place in oven at 175-250F for 24-48+ hours.  This should remove all internal moisture content from organic matter.

  3. Weigh out four equal amounts of: rye, WBS, straw, h.poo.  Record weight measured.

  4. Individually ferment rye, WBS, straw and h.poo in 4.5% and 8.5% pure cultures, and two control samples of distilled, boiled water. (all weights of organic matter and volumes of liquid are the same)

  5. After day 7 of fermentation (low o2, 75-90F) drain off liquid and place organic matter on cookie sheet.  Place cookie sheet into oven at 175-250F for 24-48+ hours until all internal moisture is removed. (I am going to carry out many of these trials in small samples so I can test on different days)

  6. Weigh samples again.  Lightest samples most likely had the greatest digestion by enzymes, acids, etc.  IMO the lightest would probably also have the greatest amount of fermentation.  Thoughts?




Heating above the boiling point of water for one or two hours might be enough.

More important: Wouldn't the microbes stay on and in the kernels? Then the weight difference might be very small and would only tell about substances that went into solution.
Unfortunately I have no idea on how to remove our little helpers, so only the grain would remain. I guess shaking wouldn't help.


Carsten


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: Mycelio]
    #8929118 - 09/14/08 02:41 PM (3 years, 8 months ago)

Hey buddy,

One very important step I neglected to add when I posted is the step to kill the microbes and stop enzymatic action (digestion).  This step is important because after we drain the organic matter it will still be covered in microbes and enzymes which would continue to digest the organic matter.  One needs to add 4% (over 3%) phosphoric acid an hour or two before straining out the organic matter to kill microbes and stop enzymes.  (I'll update my post)  --Citric acid also works but I am not sure of the quantity needed.

And 7 days is probably too short of a time period, a month or two may provide measurable differences for results.  Then we could assume (with a leap of faith) that a shorter ferment with the same molasses % will provide greater digestion (but it may not be that linear).  Regardless, I am still going to test at day 7, day 14, 21 and 28, hopefully I can record measurable differences in weight from a short ferment.

I am debating about grinding the organic matter or possibly running it through a food processor after it is dried in the oven.  Microbes and enzymes would have greater effect and we may be able to quantify results easier due to higher digestion rates.  But, that would not be an accurate representation of the 'real world' as we would never grind up grain before we use it.  So maybe running trials with ground/food processed organic matter and trials with unmolested organic matter is wise?  Then compare the results, similarities would be nice and could reinforce the observations/conclusion.  Thoughts?



Quote:

Heating above the boiling point of water for one or two hours might be enough.




To remove internal moisture?  No, unfortunately not, it needs to slow and low temperatures.  Though I bet a food dehydrator would work for small samples.


Quote:

More important: Wouldn't the microbes stay on and in the kernels? Then the weight difference might be very small and would only tell about substances that went into solution.
Unfortunately I have no idea on how to remove our little helpers, so only the grain would remain. I guess shaking wouldn't help.




Yea I thought about that and I think our best educated guess is fine.  I often think of microbes in a 'ball park' type of manner:  They adapt and exact weight measurements are not overly important (in this regard).

  • After phosphoric acid is applied the mcirobes die and enzymatic action stops.

  • Once the organic matter is baked in the oven the water content of the microbes will be removed leaving only dry weight of cells.  This should be negligible and IMVHO we do not need to be concerned with the additional weight. 

  • The bio-nutrients, enzymes, acids, carbohydrates, etc absorbed by the organic matter is IMO also a negligible amount of weight.


What do you think?


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Re: LAB: Isolate and culture Lactic Acid Bactria [BIM part 1] [Re: Mycelio]
    #8929189 - 09/14/08 02:57 PM (3 years, 8 months ago)

Oh yea,

I forgot about this study, I read it awhile ago.  The study finds that 7.5% black strap molasses provides optimal fermentation of cod gurry (hydrolyzed whole fish) by LAB.  So that backs up Mycomon's idea of 1:1:10 (8.5%) or around 1:1:12 should  provide about 7.5-8%.  But that is optimal for fermenting hydrolyzed fish, the optimal level for grain may be different.  I suspect it is not though, I suspect we should be using 8% molasses to cover most all basis.

I will update my guide to suggest dilution of 1:1:10 to achieve about 8-8.5% black strap molasses.  I do not think a bit too strong % of black strap molasses is inhibitory, though a bit too weak % of molasses is probably non-optimal (while not really inhibitory I guess).  And just for ease of use I think suggesting 1:1:10 is the way to go. Thoughts?

Another point is that a pure culture of 1:1:10 won't provide 8% in the ferment solution.  But I think that is OK as long as we use strong dilution ratio in the ferment solution.  While 1:1 is probably overkill, 1:2 or 1:3 might be wise, or a bit weaker around 1:5.  In that study they are using the inherent LAB from the cod, they are not applying a pure culture of LAB.  In that case a higher % of blackstrap molasses (cited as 7.5% in study) within the ferment solution is needed.  But, we are using a already highly active pure culture which still has glucose that has yet to be processed and will aid when the pure culture is diluted into a ferment solution.  All in all, I think  we are safe suggesting 1:1:10 to make the pure culture and then 1:3, 1:5, 1:10 etc for fermenting and 1:10, 1:20, 1:50 etc, for application to bulk sub, casing, etc.  Thoughts?


I enjoyed reading the evidence on LAB's preference for glucose from black strap molasses.

"OPTIMIZATION OF THE LACTIC ACID FERMENTATION OF HYDROLYZED COD GURRY WITH MOLASSES"
http://www3.interscience.wiley.com/journal/119327127/abstract?CRETRY=1&SRETRY=0
Quote:

ABSTRACT:
The purpose of this study was to determine the optimum concentration of blackstrap molasses required in conjunction with the use of several species of homofermentative lactic acid bacteria in the fermentation of hydrolyzed cod gurry. Blackstrap molasses at a concentration of 7.5% was found to be optimum for achieving a successful lactic acid fermentation of hydrolyzed cod gurry. Among the three homofermentative lactic acid bacteria studied (Lactobacillus plantarum, Pediococcus acidilactici and Streptococcus faecium) L. plantarum resulted in the most rapid fementation. S. faecium was the least desirable bacterium on the basis of fermentation rates and extent of pH decrease after 72 h of incubation. All three organisms failed to utilize significantly the sucrose derived from molasses, even though sucrose was the most abundant carbohydrate in the molasses. P. acidilactici was unable to utilize sucrose when present as a sole carbohydrate, while L. plantarum and S. faecium decreased the pH in broth cultures with sucrose as a sole carbohydrate. These results suggest that glucose in molasses functions as a repressor of invertase formation in L. plantarum and S. faecium, and that the use of derepressed mutants should allow a significant decrease in the amount of molasses required for a satisfactory fermentation.




Edited by quickpick (09/14/08 03:40 PM)


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